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Species belonging to selected taxon:

Saccharum officinarum



ABOUT THIS RECORD

ID: MNEST002475
species: Saccharum officinarum
miRNA family: MIR1439
source: miRNEST

Taxonomy by NCBI:
Saccharum officinarum Saccharum officinarum complex Saccharum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
ATTTGGAATGGAGTGAGTAGA

miRNA*
TACTTCTCCATTCCAAATTG

mismatches: 2
bulges: 1

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pre-miRNA
TCCATTCCAAATTGGTAAGAAATACTTCTCCATTCCAAATTGTAAGTCATTTTGGCTTTTCTACATACATAGCTTTTGTTACATATCTAGATATACATTA
TGTCCGGATATAAAGTAAACACTATGTATCTAAAAAAGCTAGAACAACTTACAATTTGGAATGGAGTGAGTAGAATTTTAATCGAGTTTACTA


dot-bracket secondary structure
...........(((((.((((.(((((((((((((((((((((((((..(((((((((((.((.((((((((......((((((((((.((((((...))
)))).))))))...))))...)))))))).)).)))))))))))..)))))))))))))))))))).)))))...)))).)))))........



SIMILARITIES
miRBase no hits

PMRD no hits

microPC miR1439: 0.00004
UniProt no hits

RFAM MIR1122: 0.00000000000005
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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